This work is partially supported by the Biocentrum Ochota project (POIG.02.03.00-00-003/09) and was partially supported by the Polish government grant (N N206 356036).

Mikołaj Rybiński is a scholar within Sub-measure 8.2.2 Regional Innovation Strategies, Measure 8.2 Transfer of knowledge, Priority VIII Regional human resources for the economy, Human Capital Operational Programme co-financed by EU and state budget.

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Tav4SB project

Contents

• Overview
• Client installation
• Exemplary experiments
  1. Simulate ODEs
  2. PMC
  3. MPSA
• Resources
  1. Web service
  2. Workflows
  3. Models
  4. JAR libraries
• Source code
  1. Release package
  2. Release notes
  3. Installation instruction
• Citing

Contact

If you have any questions, comments or seek help with our WS or any other resource, please contact us via tav4sb discussion group or directly at tav4sb@mimuw.edu.pl.

Exemplary experiments

Note: when running workflows ignore Taverna 2 workflow validation warnings, i.e. when asked if to proceed despite warnings, choose "Yes".

1. Simulate SBML-derived ODEs
2. Probabilistic model checking (PMC) of SBML stochastic model
3. Multi-parameter sensitivity analysis (MPSA) of a deterministic and stochastic SBML models.

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