Case study input data
CAMBer
- Input dataset for the M. tuberculosis case study.
- Input dataset for the S. aureus case study.
- Input dataset for the E. coli case study.
- Two example datasets for M. tubercuolisis and S. aureus (with plasmids) are integrated with the software.
- Details on the input data used in S. aureus and E. coli case studies can be found in the provided GenBank files.
- Details on the input data for the M. tuberculosis case study:
- H37Rv - genome sequence and annotation from NCBI database,
(NCBI ID: NC_000962.2, last change: Jan 5, 2005, download: Jul 8, 2010) - H37Ra - genome sequence and annotation from NCBI database,
(NCBI ID: NC_009525.1, last change: Mar 12, 2007, download: Jul 8, 2010) - F11 - genome sequence and annotation from NCBI database,
(NCBI ID: NC_009565.1, last change: Jun 14, 2007, download: Jul 8, 2010) - KZN 4207(B) - genome sequence and annotation from the Broad Institute database,
(download: Jul 8, 2010) - KZN 4207(T) - genome sequence and annotation from supplementary material of the publication
- KZN 1435 - genome sequence and annotation from the Broad Institute database,
(download: Jul 8, 2010)
- H37Rv - genome sequence and annotation from NCBI database,
- KZN V2475 - genome sequence and annotation from supplementary material of the publication
- KZN R506 - genome sequence and annotation from supplementary material of the publication
- KZN 605 - genome sequence and annotation from the Broad Institute database,
(download: Jul 8, 2010)
