Interesting web links

Motif Finding

Sequence motif finding programs:

• Melina ;)
• AlignACE
• Bioprospector
• Consensus
• Gibbs sampler
• MEME
• Yeast Motif Finder
• rVista
• ConReal
• Alibaba
• Weeder
• SeSiMCMC
• Mitra
• ANN-Spec
• MotifSampler
• Improbizer
• GLAM

Databases

• SCPD
• TransFac
• MIPS
• SGD - Yeastgenome.org
• ASAP - E.Coli
• ColiBASE
• E.Coli Transcription Factors
• Baccilus Subtilis Transcription Fators
• E.Coli Database portal - assorted collection of E.Coli database links
• regulonDB
• Ensebl genome browser
• Biocyc - Collection of pathway/genome databases (EcoCyc, MetaCyc etc.

Other

• WebLogo - Sequence Logos online
• Institute for Systems Biology
• Assessment of Motif Discovery Algorithms