EMS School 2013 @CompBio @ MIMUW

EMS Autumn School on Computational Aspects of Gene Regulation

Sunday, October 13th

Monday, October 14th

8:00 - 9:00: Breakfast and late registration
9:00 - 9:05: Jerzy Tiuryn - Opening remarks
9:05 - 10:35: David Arnosti - The importance of context in eukaryotic gene expression: from DNA sequence to transcriptional readout
10:35 - 11:00: Coffee break
11:00 - 12:30: Shyam Prabhakar - Introduction to regulatory genomics and Transcription-Factor-DNA Binding affinity
12:30 - 14:00: Lunch break
14:30 - 16:00: Artur Jarmołowski - Alternative splicing as a source of genetic diversity
16:00 - 16:30: Coffee break
16:30 - 18:00: Wolfgang Huber - Differential expression analysis including application to alternative exon usage
19:00 - 21:00: Welcome dinner

Tuesday, October 15th

8:00 - 9:00: Breakfast
9:00 - 10:30: Zofia Szweykowska-Kulińska - MicroRNA: biogenesis and their role in regulation of gene expression
10:30 - 11:00: Coffee break
11:00 - 12:30: David Arnosti - DNA sequenced-based transcriptional modeling: fractional occupancy and two-layer models provide genome-to-phenotype insight
12:30 - 14:00: Lunch break
14:30 - 16:00: Wolfgang Huber - Multiple testing & (independent) filtering, classification, model complexity and regularisation
16:00 - 16:30: Coffee break
16:30 - 18:00: Martin Vingron - Role of epigenetic modifications in gene expression
19:00 - 20:00: Dinner
20:00-21:00: Poster session with refreshments and cheese

Wednesday, October 16th

8:00 - 9:00: Breakfast
9:00 - 10:30: Bartek Wilczyński - Regulatory network reconstruction: different models and approaches
10:30 - 11:00: Coffee break
11:00 - 12:30: Uwe Ohler - Post-transcriptional regulation by small RNAs
12:30 - 14:00: Lunch break
14:00 - 20:00: Sightseeing trip to Poznań
20:00 - 21:00: Dinner

Thursday, October 17th

8:00 - 9:00: Breakfast
9:00 - 10:30: Martin Vingron - Reconstructing networks of relationships between histone marks
10:30 - 11:00: Coffee break
11:00 - 12:30: Limsoon Wong - Disease gene expression and proteomic profile analysis based on regulatory networks and systems: Part I
12:30 - 14:00: Lunch break
14:30 - 16:00: Limsoon Wong - Disease gene expression and proteomic profile analysis based on regulatory networks and systems: Part II
16:00 - 16:30: Coffee break
16:30 - 18:00: Julien Gagneur - De novo annotation of genomic features
19:00 - 22:00: Social dinner

Friday, October 18th

8:00 - 9:00: Breakfast
9:00 - 10:30: Uwe Ohler - Post-transcriptional regulation by RNA binding proteins
10:30 - 11:00: Coffee break
11:00 - 12:30: Shyam Prabhakar - Applying Classical Signal Processing Techniques to NGS Data ; Hypothesis Testing in Genomics: Theory, Pitfalls and Practical Examples
12:30 - 14:00: Lunch break
14:30 - 16:00: Julien Gagneur - Systems genetics: Of genotype, gene expression and phenotypes
16:00 - 16:30: Coffee break
16:30 - 17:00: Agnieszka Stasiakowska - COST.EU funding opportunities for European Scientists
17:00 - 18:30: Bartek Wilczyński - Role of chromatin domains in integrative models of gene expression
19:00 - 20:30: Poster session with refreshments and cheese
20:30 - 22:00: Poster prize announcement and closing remarks

Saturday, October 19th

Dates:: Oct 13-19, 2013
Location:: Będlewo Palace
contact: Jerzy Tiuryn (tiuryn@mimuw.edu.pl)
Bartek Wilczyński (bartek@mimuw.edu.pl)
registration:: Closed